PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0041s0029.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family HB-other
Protein Properties Length: 278aa    MW: 31298.2 Da    PI: 5.4058
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0041s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.52.6e-14860553
                          SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS
              Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53
                            ft+eq e+Le+l++++++ps  + ++L  +     +++ +q+kvWFqNrR 
  Sphfalx0041s0029.1.p  8 EPFTEEQMEALERLYHECPKPSSIRLQQLIWEApvlaSIEPKQIKVWFQNRRR 60
                          68***************************8877778**************984 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.8E-6369IPR001356Homeobox domain
SuperFamilySSF466898.98E-13867IPR009057Homeodomain-like
PfamPF000466.7E-12859IPR001356Homeobox domain
CDDcd000861.84E-101067No hitNo description
PROSITE profilePS5007113.21065IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-131066IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDVSGKYEPF TEEQMEALER LYHECPKPSS IRLQQLIWEA PVLASIEPKQ IKVWFQNRRR  60
CREKQQKKKE PTRSLVSMNA KLTALNKLLV EENERLARHT SQLTLDNRML RQQLHVLPPA  120
APGPDTQHSL LLNQEIQHQM KEERVNEEDS LLNALKDGGG NEKNTPQDHL SLQPIPGQNY  180
YGVAAASTDD GCSDSVITVV GLPQNSTPQH YSPQDVHSAG RLLAVTDEMT LTEFLAKANR  240
IVVDWIQLPS MKEIGGNGVA WELCRGDQYA DDQESQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001775255.15e-70predicted protein
SwissprotQ9ZU115e-39ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0Y0JAI11e-75A0A0Y0JAI1_9BRYO; C3HDZ4 (Fragment)
STRINGPP1S188_95V6.19e-68(Physcomitrella patens)
STRINGPP1S70_192V6.11e-67(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.33e-34HD-ZIP family protein